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Bioimage-Informatics Clinic (Monday, February 12, 2018)

In 2018, effective immediately, we like to introduce the Bioimage-Informatic-Clinic.

This means that once a week our door is open for you to seek council for image and data analysis and general topics around microscopy data. Topics include: image restoration, deconvolution, volume reconstruction, image alignment (registration), 3D image processing, object segmentation, object tracking, object quantification, co-localisation analysis, batch processing, data visualisation, data analysis pipelines, data management and many more.

Every Tuesday afternoon from 13:00 – 17:00  you can bring your microscopy data (external HD or the server address) and your questions  to PER02 1.406.
Visitors will be attended to on a first come first served basis (no need to arrange a meeting). Come around, hang-out and let’s crunch some numbers.

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New Image Analysis Workstation (Tuesday, December 12, 2017)

For those who spent a lot of time waiting for the computer to finish some image analysis task, we acquired a new desktop computer that might help remedy this loss of time. This new computer has a hardware configuration for large datasets that require computationally intensive processing.

threadripper

You can find more details on number cruncher’s page. This workstation is henceforth available for all facility users.

OMERO update (Saturday, October 21, 2017)

We updated our OMERO.server from 3.3.1 to 3.3.5

During the upgrade we optimized the server’s software dependencies for optimal performance.

In case your desktop clients do not connection to the server anymore, please update the OMERO.insight on you computer too. You find instruction and the download of the pre-configured clients on our web-site.

omero 5.3.5 upgrade

There is also a new goodie: FPBioimage is a 3D viewer for the web. It is currently in beta, so some irregularities are expexted. Also you should make sure you have a fast internet connection.

omero_fpbioimage_contextual-menu omero_fpbioimage_screenshot

Huygens Workshop 15. September 2017 (Monday, August 14, 2017)

You would like to get the best out of your image data, try to push the resolution? If this is the case you should sign up for the upcoming Huygens  workshop. During this one-day-workshop you can learn about image restoration and how you can apply it to your own image data here at the University of Fribourg.

Find all the details of the workshop on the event-page.

SVI_huygens_presentation_smaller

Imaris Workshop 4. July 2017 (Monday, June 12, 2017)

imaris-track-example imaris-filament-example

For friends of 3D image processing and analysis:  We are happy to announce the next Imaris workshop here in Fribourg. This is an opportunity to get the overview of the latest functionality of the software and to either familiarize with tutorials or start to work on a solution for your own data.

Find all the details on the event page. The workshop is free for all facility users. Please register (login required) rather early than too late, there is only a limited number of slots available.

Axio Imager 2 Demo (Wednesday, May 31, 2017)

Check out the Axio Imager Demo next week!
All the details can be found on this page.

zeiss_axio-imager-2

Nuit des Musées-Nacht der Museen Fribourg (Thursday, May 18, 2017)

 

Screen Shot 2017-05-18 at 14.48.07

Bioimage opens its doors to the public this Saturday night
http://www.ndm-fribourg.ch