Software

Supported Software

SOFT SOURCE Purpose License USER INTERFACE Installation FEATURES
Imaris Bitplane Image Analysis 3 Floating Graphical, windowed  contact 3D Image Processing
Huygens SVI Image Restoration 1 Desktop Web-interface  contact Deconvolution
OMERO OME Data Management GPL Web-interface, Desktop clients baramundi kiosk, download,
contact,
Tagging, Annotation, Metadata, Collaboration,
Search
ImageJ
(Fiji distribution)
NIH Image Analysis GPL Graphical, windowed baramundi kiosk, download,
contact,
General purpose

 

Special Request

SOFT SOURCE Purpose License USER INTERFACE Installation FEATURES
Icy Institut Pasteur General mircorsopy image processing GPL3 Windowed download Spot detector
CellProfiler Broad Institute Image Analysis (High Content Screening) GPL Windowed, pipeline based  download Easy batch processing
Orbit Idorsia Pharmaceuticals Ltd Tissue analysis GPL3 Windowed download whole tissue analysis
QPath Centre for Cancer Research & Cell Biology Digital pathology, tissue analysis GPL3 Windowed download whole tissue analysis
 KNIME KNIME.com AG Data Mining/Image Processing/Machine-Learning GPL3 Windowed, workflow based downloadcontact Easily scalable
 R R-Project Statistical Data Analysis GPL Scripting console, RStudio IDE downloadcontact Can be used with KNIME
Python Python.org Bioinformatics, Data Analysis, Image Processing GPL Scripting console, iPython IDE  download Easily scalable (hight performance computing)