Tag Archives: Imaris

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Bioimage-Informatics Clinic

In 2018, effective immediately, we like to introduce the Bioimage-Informatic-Clinic.

This means that once a week our door is open for you to seek council for image and data analysis and general topics around microscopy data. Topics include: image restoration, deconvolution, volume reconstruction, image alignment (registration), 3D image processing, object segmentation, object tracking, object quantification, co-localisation analysis, batch processing, data visualisation, data analysis pipelines, data management and many more.

Every Tuesday afternoon from 13:00 – 17:00  you can bring your microscopy data (external HD or the server address) and your questions  to PER02 1.406.
Visitors will be attended to on a first come first served basis (no need to arrange a meeting). Come around, hang-out and let’s crunch some numbers.

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New Image Analysis Workstation

For those who spent a lot of time waiting for the computer to finish some image analysis task, we acquired a new desktop computer that might help remedy this loss of time. This new computer has a hardware configuration for large datasets that require computationally intensive processing.
You can find more details on number cruncher’s page. This workstation is henceforth available for all facility users.

Imaris Workshop

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At the University of Fribourg we use Imaris to process and analyse multidimensional image data-sets issue from epi-fluorescene microscopy.  In particular we use it’s advanced functionality for 3 dimensional (optically sectioned) image data and perform volumetric analysis.

We organise a worksop with representatives of Bitplane for you, to discover the possibilities of the software and train yourself as a user.

Further information:

Organisation

date: 4. July 2017 from 9:00-17:00
location: PER II, F230
participation conditions: UniFr staff, free of charge, registration required

Participants are free to only attend the presentation of Imaris or to work through the entire workshop.

schedule

Time Description
 09:00-10:30 presentation of Imaris (functionality, use cases)
 10:30-10:45   coffee break
 11:00-13:00 introduction to Imaris (basics)
13:00-14:00   lunch break
14:00-15:30 hands-on workshop
15:30-16:00   coffee break
16:00-17:30 hands-on workshop

 

Registration

… is closed