Supported Software
| SOFT | SOURCE | Purpose | License | USER INTERFACE | Installation | FEATURES |
|---|---|---|---|---|---|---|
| Imaris | Bitplane | Image Analysis | 3 Floating | Graphical, windowed | contact | 3D Image Processing |
| Huygens | SVI | Image Restoration | 1 Desktop | Web-interface | contact | Deconvolution |
| OMERO | OME | Data Management | GPL | Web-interface, Desktop clients | baramundi kiosk, download, contact, |
Tagging, Annotation, Metadata, Collaboration, Search |
| ImageJ (Fiji distribution) |
NIH | Image Analysis | GPL | Graphical, windowed | baramundi kiosk, download, contact, |
General purpose |
Special Request
| SOFT | SOURCE | Purpose | License | USER INTERFACE | Installation | FEATURES |
|---|---|---|---|---|---|---|
| Icy | Institut Pasteur | General mircorsopy image processing | GPL3 | Windowed | download | Spot detector |
| CellProfiler | Broad Institute | Image Analysis (High Content Screening) | GPL | Windowed, pipeline based | download | Easy batch processing |
| Orbit | Idorsia Pharmaceuticals Ltd | Tissue analysis | GPL3 | Windowed | download | whole tissue analysis |
| QPath | Centre for Cancer Research & Cell Biology | Digital pathology, tissue analysis | GPL3 | Windowed | download | whole tissue analysis |
| KNIME | KNIME.com AG | Data Mining/Image Processing/Machine-Learning | GPL3 | Windowed, workflow based | download, contact | Easily scalable |
| R | R-Project | Statistical Data Analysis | GPL | Scripting console, RStudio IDE | download, contact | Can be used with KNIME |
| Python | Python.org | Bioinformatics, Data Analysis, Image Processing | GPL | Scripting console, iPython IDE | download | Easily scalable (hight performance computing) |