Software

Supported Software

SOFT SOURCE Type License USER INTERFACE Installation Applications
Imaris Bitplane Image analysis 3 Floating Graphical, windowed  contact 3D image processing, volumetric measurements, object tracking, filament tracing, data visualisation
Huygens SVI Image restoration 1 Desktop Web-interface  contact Image restoration, deconvolution, pre-processing
OMERO OME Data management GPL Web-interface, desktop clients baramundi kiosk, download,
contact,
Tagging, annotation, metadata, collaboration,
search
ImageJ
(Fiji distribution)
NIH Image analysis GPL Graphical, windowed baramundi kiosk, download,
contact,
General purpose image analysis

From microscope vendors

SOFT Vendor Installation Applications
LASX-Core Leica contact, download Viewer, editor for Leica file-formats
NDPI.viewer Hamamatsu contact Viewer for ndpi-files
NDPI.toolbox Hamamatsu contact Editor, batch converter for ndpi-files

Special Request

SOFT SOURCE Purpose License USER INTERFACE Installation FEATURES
Icy Institut Pasteur General mircorsopy image processing GPL3 Windowed download Spot detector
CellProfiler Broad Institute Image Analysis (High Content Screening) GPL Windowed, pipeline based  download Easy batch processing
MotionTracking MPI-CBG Cell segmentation, particle tracking ? Windowed download Sub-pixel precision
Orbit Idorsia Pharmaceuticals Ltd Tissue analysis GPL3 Windowed download Whole tissue analysis
QPath Centre for Cancer Research & Cell Biology Digital pathology, tissue analysis GPL3 Windowed download Whole tissue analysis
 KNIME KNIME.com AG Data Mining/Image Processing/Machine-Learning GPL3 Windowed, workflow based downloadcontact Easily scalable
 R R-Project Statistical Data Analysis GPL Scripting console, RStudio IDE downloadcontact Can be used with KNIME
Python Python.org Bioinformatics, Data Analysis, Image Processing GPL Scripting console, iPython IDE  download Easily scalable (hight performance computing)