Metagenomics data analysis

  • Teaching

    Details

    Faculty Faculty of Science and Medicine
    Domain Biology
    Code UE-SBL.00425
    Languages English
    Type of lesson Lecture
    Level Master
    Semester SP-2022

    Title

    French Analyse de données métagénomiques
    German Analyse von Metagenomischen Daten
    English Metagenomics data analysis

    Schedules and rooms

    Summary schedule Thursday , Cours bloc (Spring semester)

    Teaching

    Responsibles
    • Falquet Laurent
    Teachers
    • Falquet Laurent
    Description

    Students will learn the basic principles of metagenomics data analysis and their associated methods. The course will cover the targeted methods (16S, ITS) as well as the Whole Genome/Transcriptome Sequencing methods, both in prokaryotes and eukaryotes. Students will learn which kind of data could be extracted from metagenomics analysis and how to analyze and represent these data.
     
    Condition of access

    Prerequisite: SBC.07106 or SBC.07110
    Softskills No
    Off field No
    BeNeFri No
    Mobility No
    UniPop No
  • Dates and rooms
    Date Hour Type of lesson Place
    10.03.2022 09:15 - 12:00 Cours PER 21, Room F207
    17.03.2022 09:15 - 12:00 Cours PER 21, Room F207
    24.03.2022 09:15 - 12:00 Cours PER 21, Room F207
    31.03.2022 09:15 - 12:00 Cours PER 21, Room F207
    07.04.2022 10:15 - 12:00 Cours PER 21, Room E040
  • Assessments methods

    Written exam - SP-2022, Session d'été 2022

    Date 21.06.2022 15:00 - 16:00
    Assessments methods By rating
    Descriptions of Exams

    Written exam (60 min.). One mark. 

    Oral exam - SP-2022, Autumn Session 2022

    Date 05.09.2022 13:30 - 14:40
    Assessments methods By rating
    Descriptions of Exams

    Oral exam (20 min.). One mark
  • Assignment
    Valid for the following curricula:
    Additional Courses in Sciences
    Version: ens_compl_sciences
    Paquet indépendant des branches > Specialized courses in Biology (Master level)
    Additional programme requirements for PhD studies [PRE-DOC]
    Version: 2020_1/v_01
    Additional programme requirements for PhD studies (Faculty of Science and Medicine) > Specialized courses in Biology (Master level)
    Biology [3e cycle]
    Version: 2015_1/V_01
    Continuing education > Specialized courses in Biology (Master level)
    Biology [POST-DOC]
    Version: 2015_1/V_01
    Continuing education > Specialized courses in Biology (Master level)
    MSc in Bioinformatics and Computational Biology [MA] 120
    Version: 2023_1/V_01
    MSc in Bioinformatics and computational biology, courses > MSc-BI, Module “Genomics” (from AS2020 on)
    MSc in Environmental Biology, option Applied Environmental Biology 120 [MA]
    Version: 2022_1/V_01
    MSc in Environmental Biology, option Applied Environmental Biology, lectures and seminars (from AS2021 on) > MSc-EB, option Applied Environmental Biology, elective courses (from AS2022 on) > Recommended courses
    MSc in Environmental Biology, option Ecology and Evolution 120 [MA]
    Version: 2022_1/V_01
    MSc in Environmental Biology, option Ecology and Evolution, lectures and seminars (from AS2021 on) > MSc-EB, option Ecology and Evolution, elective courses (from AS2022 on) > elective courses
    MSc in Environmental Biology, option Plant and Microbial Sciences 120 [MA]
    Version: 2022_1/V_01
    MSc in Environmental Biology, option Plant and Microbial Sciences, lectures and seminars (from AS2021 on) > MSc-EB, option Plant and Microbial Sciences, elective courses (from AS2022 on) > Recommended courses
    MSc in Environmental Biology, option Teaching 90 [MA]
    Version: 2023_1/V_01
    MSc in Environmental Biology, option Teaching, lectures and seminars (from AS2021 on) > MSc-EB, option Teaching, elective courses (from AS2023 on) > elective courses
    MSc in Molecular Life and Health Sciences, option Biochemistry and Cell Biology 120 [MA]
    Version: 2022_1/V_01
    MSc in Molecular Life and Health Sciences, option Biochemistry and Cell Biology, lectures and seminars (from AS2021 on) > MSc-ML, option Biochemistry and Cell Biology, elective courses (from AS2021 on) > Recommended courses
    MSc in Molecular Life and Health Sciences, option Developmental Biology and Regeneration 120 [MA]
    Version: 2022_1/V_01
    MSc in Molecular Life and Health Sciences, option Developmental Biology and Regeneration, lectures and seminars (from AS2021 on) > MSc-ML, option Developmental Biology and Regeneration, elective courses (from AS2021 on) > elective courses
    MSc in Molecular Life and Health Sciences, option Marine Biology 120 [MA]
    Version: 2022_1/V_01
    MSc in Molecular Life and Health Sciences, option Marine Biology, lectures and seminars (from AS2021 on) > MSc-ML, option Marine Biology, elective courses (from AS2021 on) > elective courses
    MSc in Molecular Life and Health Sciences, option Neurobiology 120 [MA]
    Version: 2022_1/V_01
    MSc in Molecular Life and Health Sciences, option Neurobiology, lectures and seminars (from AS2021 on) > MSc-ML, option Neurobiology, elective courses (from AS2021 on) > elective courses
    MSc in Molecular Life and Health Sciences, option Teaching 90 [MA]
    Version: 2023_1/V_01
    MSc in Molecular Life and Health Sciences, option Teaching, lectures and seminars (from AS2021 on) > MSc-ML, option Teaching, elective courses (from AS2023 on) > elective courses