Bioinformatics (practical course, in silico)

  • Teaching

    Details

    Faculty Faculty of Science and Medicine
    Domain Biochemistry
    Code UE-SBC.07107
    Languages English
    Type of lesson Practical work
    Level Master
    Semester SA-2020

    Schedules and rooms

    Summary schedule Monday , Cours bloc (Autumn semester)
    Struct. of the schedule 2 jours par semaine sur 3 semaines
    Contact's hours
    		42

    Teaching

    Responsibles
    • Falquet Laurent
    Teachers
    • Falquet Laurent
    Training objectives

    Learn to handle large NGS datasets of sequences using Unix HPC for various analyses: e.g. remapping, genome assembly, RNAseq,...
    Comments

    The SBC.07110 course is a compulsory prerequisite to take the SBC.07107 course.

    Please bring your own laptop for this course
    Softskills No
    Off field No
    BeNeFri Yes
    Mobility Yes
    UniPop No
  • Dates and rooms
    Date Hour Type of lesson Place
    02.11.2020 09:15 - 17:00 Cours PER 17, Room 001
    04.11.2020 09:15 - 13:00 Cours PER 21, Room C130
    04.11.2020 13:15 - 17:00 Cours PER 17, Room 001
    09.11.2020 09:15 - 17:00 Cours PER 17, Room 001
    11.11.2020 09:15 - 13:00 Cours PER 21, Room C130
    11.11.2020 13:15 - 17:00 Cours PER 17, Room 001
    16.11.2020 09:15 - 17:00 Cours PER 17, Room 001
    18.11.2020 09:15 - 13:00 Cours PER 21, Room C130
    18.11.2020 13:15 - 17:00 Cours PER 17, Room 001
  • Assessments methods

    Oral exam - SA-2020, Session d'hiver 2021

    Date 18.02.2021 09:00 - 10:00
    Assessments methods By rating
    Descriptions of Exams

    Ancienne modalité: "Written report and oral presentation" (noté sur 6)

    Vu COVID-19:

    Nouvelle modalité: Oral exam (20 min), one mark
    Comment

    COVID-19 - Modalité d'évaluation: Épreuve écrite en ligne de 60 min. Une note. 

    Oral exam - SP-2021, Autumn Session 2021

    Date 07.09.2021 09:00 - 09:20
    Assessments methods By rating
    Descriptions of Exams

    Ancienne modalité: "Written report and oral presentation" (noté sur 6)

    Vu COVID-19:

    Nouvelle modalité: Oral exam (20 min), one mark
    Comment

    Oral exam in presence (20 min), one mark
  • Assignment
    Valid for the following curricula:
    Additional Courses in Sciences
    Version: ens_compl_sciences
    Paquet indépendant des branches > Specialized courses in Biochemistry (Master level)
    Additional programme requirements for PhD studies [PRE-DOC]
    Version: 2020_1/v_01
    Additional programme requirements for PhD studies (Faculty of Science and Medicine) > Specialized courses in Biochemistry (Master level)
    Biochemistry [3e cycle]
    Version: 2015_1/V_01
    Continuing education > Specialized courses in Biochemistry (Master level)
    Biochemistry [POST-DOC]
    Version: 2015_1/V_01
    Continuing education > Specialized courses in Biochemistry (Master level)
    MSc in Bioinformatics and Computational Biology [MA] 120
    Version: 2023_1/V_01
    MSc in Bioinformatics and computational biology, courses > MSc-BI, Module “Genomics” (from AS2020 on)
    MSc in Environmental Biology, option Applied Environmental Biology 120 [MA]
    Version: 2022_1/V_01
    MSc in Environmental Biology, option Applied Environmental Biology, lectures and seminars (from AS2021 on) > MSc-EB, option Applied Environmental Biology, elective courses (from AS2022 on) > Recommended courses
    MSc in Environmental Biology, option Ecology and Evolution 120 [MA]
    Version: 2022_1/V_01
    MSc in Environmental Biology, option Ecology and Evolution, lectures and seminars (from AS2021 on) > MSc-EB, option Ecology and Evolution, elective courses (from AS2022 on) > Recommended courses
    MSc in Environmental Biology, option Plant and Microbial Sciences 120 [MA]
    Version: 2022_1/V_01
    MSc in Environmental Biology, option Plant and Microbial Sciences, lectures and seminars (from AS2021 on) > MSc-EB, option Plant and Microbial Sciences, elective courses (from AS2022 on) > Recommended courses
    MSc in Environmental Biology, option Teaching 90 [MA]
    Version: 2023_1/V_01
    MSc in Environmental Biology, option Teaching, lectures and seminars (from AS2021 on) > MSc-EB, option Teaching, elective courses (from AS2023 on) > elective courses
    MSc in Molecular Life and Health Sciences, option Biochemistry and Cell Biology 120 [MA]
    Version: 2022_1/V_01
    MSc in Molecular Life and Health Sciences, option Biochemistry and Cell Biology, lectures and seminars (from AS2021 on) > MSc-ML, option Biochemistry and Cell Biology, elective courses (from AS2021 on) > Recommended courses
    MSc in Molecular Life and Health Sciences, option Developmental Biology and Regeneration 120 [MA]
    Version: 2022_1/V_01
    MSc in Molecular Life and Health Sciences, option Developmental Biology and Regeneration, lectures and seminars (from AS2021 on) > MSc-ML, option Developmental Biology and Regeneration, elective courses (from AS2021 on) > elective courses
    MSc in Molecular Life and Health Sciences, option Marine Biology 120 [MA]
    Version: 2022_1/V_01
    MSc in Molecular Life and Health Sciences, option Marine Biology, lectures and seminars (from AS2021 on) > MSc-ML, option Marine Biology, elective courses (from AS2021 on) > Recommended courses
    MSc in Molecular Life and Health Sciences, option Neurobiology 120 [MA]
    Version: 2022_1/V_01
    MSc in Molecular Life and Health Sciences, option Neurobiology, lectures and seminars (from AS2021 on) > MSc-ML, option Neurobiology, elective courses (from AS2021 on) > elective courses
    MSc in Molecular Life and Health Sciences, option Teaching 90 [MA]
    Version: 2023_1/V_01
    MSc in Molecular Life and Health Sciences, option Teaching, lectures and seminars (from AS2021 on) > MSc-ML, option Teaching, elective courses (from AS2023 on) > elective courses