Détails

Faculté	Faculté des sciences et de médecine
Domaine	Biologie
Code	UE-SBL.00419
Langues	Anglais
Type d'enseignement	Cours
Cursus	Master
Semestre(s)	SP-2020

Horaires et salles

Horaire résumé	Mercredi , Cours bloc (Semestre de printemps)
Heures de contact	8

Enseignement

Responsables	Egger Boris August
Enseignants	Witz Guillaume
Description	Fluorescence light microscopy is a core technique to visualize biological processes in fixed and living tissue. With new development in microscope design and image acquisition progress was also made in digital image analysis.
Objectifs de formation	The aim of this course is to give the students a theoretical background in digital image analysis and to train students to use state of the art software tools. In a first module the students obtain theoretical knowledge about principles of digital image analysis and learn about ethical aspect in image manipulation. In a second module students are teached in workshops to use image analysis open source software ImageJ/Fiji and commercial software Bitplane Imaris and Huygens Deconvolution. In self-directed teaching tutorials student acquire basic image analysis skills (File formats, Metadata, Contrast adjustment, Background correction, Filtering). In workshops advanced techniques are learned such as image segmentation, 3D rendering, deconvolution, and co-localization. An introduction in batch processing and macro language will complete the session. The course will give practical guidelines that will help students with imaging projects in their line of research.
Commentaire	Jupyter Python course for image processing and analysis.
Softskills	Non
Hors domaine	Non
BeNeFri	Oui
Mobilité	Oui
UniPop	Non

Examen écrit

Mode d'évaluation

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